You can either (a) download and install the web service locally or (b) download the command-line interface. Please click here in case you want to use our hosted service.
You will need the following things properly installed on your computer.
- Java 8 or higher
Haplogrep works on Linux, macOS and Windows. Please note that fasta input files are currently supported for Linux and macOS only.
Download and Install
Linux or macOS
Download and install the latest version from our download page using the following commands:
wget https://github.com/genepi/haplogrep3/releases/download/v3.2.1/haplogrep3-3.2.1-linux.zip unzip haplogrep3-3.2.1-linux.zip ./haplogrep3
Download the latest Windows version from our download page.
Open the zip file and extract it content to a folder of choice.
Open the PowerShell and navigate to your folder where you extracted the *.exe file.
You are now ready to use Haplogrep by running
The following command starts a web service locally:
In case you want to run Haplogrep on the command-line execute the following command:
Click here to learn about all command-line parameters.